publications
in reversed chronological order
2026
- Peptide Design for Targeting BTB Domain Homodimerization of BACH2: Complementary In Silico and In Vitro ApproachesACS Omega, 2026
- Pathogenicity Prediction of Missense Variations in Hereditary Cancer GenesInternational Journal of Molecular Sciences, 2026
- Enhanced and Classical MD Simulations Map Aggregation-Prone Regions in the Olfactomedin Domain of MyocilinJournal of Chemical Information and Modeling, 2026
- The Pretransplant EASIX Score Predicts Transplant-Related Mortality in Children Undergoing Hematopoietic Stem Cell Transplantation for Non-Malignant DisordersClinical Transplantation, 2026
- Confidence scoring for deep learning-predicted antibody-antigen complexes: AntiConf as a precision-driven metricBriefings in Bioinformatics, 2026
2025
- Determination of the Roles of H. pylori Outer Membrane Virulence Factors and Pyroptosis-Associated NLRP3, ASC, Caspase-1, Gasdermin D, IL-1beta, and IL-18 in Ulcer and Gastritis PathogenesisBiology (Basel), 2025
- Exploring the role of microbiome in cystic fibrosis clinical outcomes through a mediation analysismSystems, 2025
- Insights into the solution structure of the actin-binding tail domain of metavinculin by small angle X-ray scattering and molecular dynamics simulationsInt J Biol Macromol, 2025
- AFFIPred: AlphaFold2 structure-based Functional Impact Prediction of missense variationsProtein Sci, 2025
- Computational modeling of the anti-inflammatory complexes of IL37Journal of Molecular Graphics & Modelling, 2025
- A Novel NUP85 Variant Expanding the Phenotypic Spectrum of NUP85-Associated Steroid-Resistant Nephrotic SyndromeClinical Genetics, 2025
2024
- Identification of interaction partners of outer inflammatory protein A: Computational and experimental insights into how Helicobacter pylori infects host cellsPLoS One, 2024
- Rational design of monomeric IL37 variants guided by stability and dynamical analyses of IL37 dimersComput Struct Biotechnol J, 2024
2023
- Computational completion of the Aurora interaction region of N-Myc in the Aurora a kinase complexSci Rep, 2023
- Evaluation of AlphaFold structure-based protein stability prediction on missense variations in cancerFront Genet, 2023
- Follicular homocysteine as a marker of oocyte quality in PCOS and the role of micronutrientsJ Assist Reprod Genet, 2023
- Effect of the switch status of Helicobacter pylori outer inflammatory protein A on gastric diseasesAMB Express, 2023
- Brave new surfactant world revisited by thermoalkalophilic lipases: computational insights into the role of SDS as a substrate analogPhys Chem Chem Phys, 2023
- A small non-interface surface epitope in human IL18 mediates the dynamics and self-assembly of IL18-IL18BP heterodimersComput Struct Biotechnol J, 2023
2022
- Toward Compilation of Balanced Protein Stability Data Sets: Flattening the DeltaDeltaG Curve through Systematic EnrichmentJ Chem Inf Model, 2022
- Modeling and dynamical analysis of the full-length structure of factor XII with zincJ Mol Model, 2022
2021
- Molecular modelling of the FOXO4-TP53 interaction to design senolytic peptides for the elimination of senescent cancer cellsEBioMedicine, 2021
- Bridging the Bridging Imidazolate in the Bimetallic Center of the Cu/Zn SOD1 and ALSFront Chem, 2021
2020
- Comprehensive evaluation of the MM-GBSA method on bromodomain-inhibitor setsBrief Bioinform, 2020
- Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experimentsJ Mol Model, 2020
- Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase StabilityJ Phys Chem B, 2020
2019
- Translation and cross-cultural adaptation of the extended version of the Nordic musculoskeletal questionnaire into TurkishJ Musculoskelet Neuronal Interact, 2019
- Comparative Assessment of Seven Docking Programs on a Nonredundant Metalloprotein Subset of the PDBbind RefinedJ Chem Inf Model, 2019
- In silico identification of inhibitors targeting N-Terminal domain of human Replication Protein AJ Mol Graph Model, 2019
- Insights into an alternative benzofuran binding mode and novel scaffolds of polyketide synthase 13 inhibitorsJ Mol Model, 2019
2018
- Thermostability of the PYL-PP2C Heterodimer Is Dependent on Magnesium: In Silico Insights into the Link between Heat Stress Response and Magnesium Deficiency in PlantsJ Chem Inf Model, 2018
2016
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- Probing the roles of two tryptophans surrounding the unique zinc coordination site in lipase family I.5Proteins-Structure Function and Bioinformatics, 2016
- Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamicsJ Mol Recognit, 2016
2015
2014
2013
- Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complexProtein Eng Des Sel, 2013
- The Conserved Lid Tryptophan, W211, Potentiates Thermostability and Thermoactivity in Bacterial Thermoalkalophilic LipasesPlos One, 2013
2011
- The drought response displayed by a DRE-binding protein from Triticum dicoccoidesPlant Physiol Biochem, 2011