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Welcome to the Timucin Lab, led by Emel Timucin at the Department of Molecular Biology and Genetics, Gebze Technical University.

We are a computational research group that uses molecular dynamics simulations, protein structure prediction, and bioinformatics to understand how proteins behave and how that behavior can be tuned for therapeutic ends.

Our work spans several directions:

  • Molecular dynamics & enhanced sampling — probing conformational dynamics of proteins and protein–protein complexes.
  • Structure prediction & benchmarking — assessing modern predictors (AlphaFold, Boltz, Chai, and others) on challenging targets such as antibody–antigen and protein–peptide complexes.
  • Variant interpretation — structure-informed prediction of the functional impact of missense mutations, including our AlphaFold-based pathogenicity predictor, AFFIPred.
  • Enzymes in non-native environments — how lipases and other enzymes fold, oligomerize, and stay active in deep eutectic solvents.

Join us. We are looking for graduate students (PhD and MSc) who are curious about proteins, simulation, and computational biology. If that sounds like you, please get in touch at emelt@gtu.edu.tr.

“Somewhere, something incredible is waiting to be known.” — Carl Sagan

Gebze Technical University / 41400 Turkey. You can also disable any these elements by editing profile property of the YAML header of your _pages/about.md. Edit _bibliography/papers.bib and Jekyll will render your publications page automatically.

Link to your social media connections, too. This theme is set up to use Font Awesome icons and Academicons, like the ones below. Add your Facebook, Twitter, LinkedIn, Google Scholar, or just disable all of them.


prof_pic.jpg

555 your office number

123 your address street

Your City, State 12345

Welcome to the Timucin Lab, led by Emel Timucin at the Department of Molecular Biology and Genetics, Gebze Technical University.

We are a computational research group that uses molecular dynamics simulations, protein structure prediction, and bioinformatics to understand how proteins behave and how that behavior can be tuned for therapeutic ends.

Our work spans several directions:

  • Molecular dynamics & enhanced sampling — probing conformational dynamics of proteins and protein–protein complexes.
  • Structure prediction & benchmarking — assessing modern predictors (AlphaFold, Boltz, Chai, and others) on challenging targets such as antibody–antigen and protein–peptide complexes.
  • Variant interpretation — structure-informed prediction of the functional impact of missense mutations, including our AlphaFold-based pathogenicity predictor, AFFIPred.
  • Enzymes in non-native environments — how lipases and other enzymes fold, oligomerize, and stay active in deep eutectic solvents.

Join us. We are looking for graduate students (PhD and MSc) who are curious about proteins, simulation, and computational biology. If that sounds like you, please get in touch at emelt@gtu.edu.tr.

“Somewhere, something incredible is waiting to be known.” — Carl Sagan

Gebze Technical University / 41400 Turkey. You can also disable any these elements by editing profile property of the YAML header of your _pages/about.md. Edit _bibliography/papers.bib and Jekyll will render your publications page automatically.

Link to your social media connections, too. This theme is set up to use Font Awesome icons and Academicons, like the ones below. Add your Facebook, Twitter, LinkedIn, Google Scholar, or just disable all of them.